keyword in microRNA or target gene :
The pre-miRNA of MI0000787
Gene
HGNC MIRN379
EMBL AY882324
Accession no
MI0000787
ID
hsa-mir-379
Species
Homo sapiens
Description
Homo sapiens miR-379 stem-loop
Genomic Location
14 : 100558156 - 100558222 : +
View in the Genome Browser
Locate on gene exon/intron/UTR
intergenic
Pre-miRNA length
67 nt
Comments
2nd structure
[ pdf format ]
Get miRNA's sequence:
 
Related miRNAs
hsa-mir-379 hsa-mir-380 mmu-mir-379 mmu-mir-380 mmu-mir-411
rno-mir-379 hsa-mir-411 hsa-mir-758 mmu-mir-758 bta-mir-380
The mature miRNA of MI0000787
Mature name
hsa-miR-379
Mature sequence
6| 5'- UGGUAGACUAUGGAACGUA -3' |24
Tissue specificity

QPCR microRNA expression profile

 

Target genes
ENST00000371079 (targeted by hsa-miR-379, predicted by TargetScan)
Tyrosine-protein kinase transmembrane receptor ROR1 precursor (EC 2.7.10.1) (Neurotrophic tyrosine kinase, receptor-related 1). [Source:Uniprot/SWISSPROT;Acc:Q01973]
 
     
ENST00000370185 (targeted by hsa-miR-379, predicted by TargetScan)
plasticity related gene 1 [Source:RefSeq_peptide;Acc:NP_055654]
 
     
ENST00000370184 (targeted by hsa-miR-379, predicted by TargetScan)
plasticity related gene 1 [Source:RefSeq_peptide;Acc:NP_055654]
 
     
   
 
The reference
Literature
1. "A pancreatic islet-specific microRNA regulates insulin secretion"
  Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M
  Nature. 432:226-230(2004).
2. "Clustering and conservation patterns of human microRNAs"
  Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A, Brownstein MJ, Tuschl T, Margalit H
  Nucleic Acids Res. 33:2697-2706(2005).
3. "Identification of clustered microRNAs using an ab initio prediction method"
  Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
  BMC Bioinformatics. 6:267(2005).
 

Department of Biological Science and Technology,
Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan
Contact with: bryan@mail.NCTU.edu.tw

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