keyword in microRNA or target gene :
The pre-miRNA of MI0000476
Gene
HGNC MIRN138-1
Accession no
MI0000476
ID
hsa-mir-138-1
Species
Homo sapiens
Description
Homo sapiens miR-138-1 stem-loop
Genomic Location
3 : 44130708 - 44130806 : +
View in the Genome Browser
Locate on gene exon/intron/UTR
intergenic
Pre-miRNA length
99 nt
Comments
This miRNA sequence is predicted based on homology to a verified miRNA from mouse [1]. The expression of this miRNA has not been verified in human.
2nd structure
[ pdf format ]
Get miRNA's sequence:
 
Related miRNAs
mmu-mir-138-2 hsa-mir-138-2 hsa-mir-138-1 mmu-mir-138-1 rno-mir-138-2
rno-mir-138-1 gga-mir-138-1 gga-mir-138-2 dre-mir-138 fru-mir-138
tni-mir-138 xtr-mir-138 bta-mir-138 mdo-mir-138
The mature miRNA of MI0000476
Mature name
hsa-miR-138
Mature sequence
23| 5'- AGCUGGUGUUGUGAAUC -3' |39
Tissue specificity
Bead-array microRNA expression profile
MicroRNA Expression Profiles Classify Human Cancers
  Nature 435, 834-838(9 June 2005)

QPCR microRNA expression profile

 

Target genes
ENST00000378398 (targeted by hsa-miR-138, predicted by TargetScan)
PR domain zinc finger protein 16 (PR domain-containing protein 16) (Transcription factor MEL1). [Source:Uniprot/SWISSPROT;Acc:Q9HAZ2]
 
     
ENST00000353409 (targeted by hsa-miR-138, predicted by TargetScan)
Kinesin-like protein KIF1B (Klp). [Source:Uniprot/SWISSPROT;Acc:O60333]
 
     
ENST00000377081 (targeted by hsa-miR-138, predicted by TargetScan)
Kinesin-like protein KIF1B (Klp). [Source:Uniprot/SWISSPROT;Acc:O60333]
 
     
   
 
The reference
Literature
1. "Identification of tissue-specific microRNAs from mouse"
  Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T
  Curr Biol. 12:735-739(2002).
 

Department of Biological Science and Technology,
Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan
Contact with: bryan@mail.NCTU.edu.tw

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